Publications

Peer-reviewed articles


  1. L. Grinberg, D. A. Fedosov, and G. E. Karniadakis, "Parallel multiscale simulations of a brain aneurysm", Journal of Computational Physics, submitted, 2012.
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  2. D. A. Fedosov, S. P. Singh, A. Chatterji, R. G. Winkler, and G. Gompper, "Semi-dilute solutions of ultra-soft colloids under shear flow", Soft matter, 8, 4109-4120, 2012.
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  3. D. A. Fedosov, J. Fornleitner, and G. Gompper, "Margination of white blood cells in microcapillary flow", Physical Review Letters, 108, 028104, 2012.
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  4. L. Grinberg, V. Morozov, D. A. Fedosov, J. A. Insley, M. E. Papka, K. Kumaran, and G. E. Karniadakis, "A new computational paradigm in multiscale simulations: Application to brain blood flow", refereed article in Proceedings of the 2011 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, SC’11, accepted as a finalist for the Gordon Bell award, 2011.
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  5. D. A. Fedosov, H. Lei, B. Caswell, S. Suresh, and G. E. Karniadakis, "Multiscale modeling of red blood cell mechanics and blood flow in malaria", PLoS Computational Biology, 7(12), e1002270, 2011.
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  6. D. A. Fedosov, W. Pan, B. Caswell, G. Gompper, and G. E. Karniadakis, "Predicting human blood viscosity in silico", Proceedings of the National Academy of Sciences USA, 108(29), 11772-11777, 2011.
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  7. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "A wall-shear-stress based model for adhesive dynamics of red blood cells in malaria", Biophysical Journal, 100(9), 2084-2093, 2011.
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  8. W. Pan, D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Predicting dynamics and rheology of blood flow: A comparative study of multiscale and low-dimensional models of red blood cells", Microvascular Research, 82(2), 163-170, 2011.
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  9. H. Lei, D. A. Fedosov, and G. E. Karniadakis, "Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics", Journal of Computational Physics, 230(10), 3765-3779, 2011.
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  10. D. A. Fedosov, B. Caswell, S. Suresh, and G. E. Karniadakis, "Quantifying the biophysical characteristics of Plasmodium-falciparum-parasitized red blood cells in microcirculation", Proceedings of the National Academy of Sciences USA, 108(1), 35-39, 2011.
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  11. D. A. Fedosov, B. Caswell, A. S. Popel, and G. E. Karniadakis, "Blood flow and cell-free layer in microvessels", Microcirculation, 17, 615-628, 2010.
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  12. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "A multiscale red blood cell model with accurate mechanics, rheology, and dynamics", Biophysical Journal, 98(10), 2215-2225, 2010.
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  13. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Systematic coarse-graining of spectrin-level red blood cell models", Computer Methods in Applied Mechanics and Engineering, 199, 1937-1948, 2010.
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  14. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Steady shear rheometry of dissipative particle dynamics models of polymer fluids in reverse Poiseuille flow", Journal of Chemical Physics, 132(14), 144103, 2010.
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  15. D. A. Fedosov and G. E. Karniadakis, "Triple-decker: Interfacing atomistic-mesoscopic-continuum flow regimes", Journal of Computational Physics, 228(4), 1157-1171, 2009.
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  16. W. Pan, D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Hydrodynamic interactions for single dissipative-particle-dynamics particles and their clusters and filaments", Physical Review E, 78(4), 046706, 2008.
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  17. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Dissipative particle dynamics simulation of depletion layer and polymer migration in micro- and nanochannels for dilute polymer solutions", Journal of Chemical Physics, 128(14), 144903, 2008. Selected for publication in Virtual Journal of Nanoscale Science & Technology, 17(17), April 28 2008.
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  18. D. A. Fedosov, I. V. Pivkin, and G. E. Karniadakis, "Velocity limit in DPD simulations of wall-bounded flows", Journal of Computational Physics, 227(4), 2540-2559, 2008.
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  19. A. A. Alexeenko, D. A. Fedosov, D. A. Levin, S. F. Gimelshein, and R. J. Collins, "Transient heat transfer and gas flow in a MEMS-based thruster", Journal of Microelectromechanical Systems, 15(1), 181-194, 2006.
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  20. A. A. Alexeenko, D. A. Fedosov, D. A. Levin, S. F. Gimelshein, and R. J. Collins, "Performance analysis of microthrusters based on coupled thermal-fluid modeling and simulation", Journal of Propulsion and Power, 21(1), 95-101, 2005.
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  21. T. Ozawa, D. A. Fedosov, D. A. Levin, and S. F. Gimelshein, "Quasi-classical trajectory modeling of OH production in direct simulation Monte Carlo", Journal of Thermophysics and Heat Transfer, 19(2), 235-244, 2005.


Book chapters


  1. D. A. Fedosov, "Simulations of blood flow on the cell scale", lecture manuscript of the IAS Winter School - Hierarchical Methods for Dynamics in Complex Molecular Systems organized by J. Grotendorst, G. Sutmann, G. Gompper, and D. Marx, Juelich, Germany, 2012.
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  2. D. A. Fedosov, I. V. Pivkin, W. Pan, M. Dao, B. Caswell, and G. E. Karniadakis, "Multiscale modeling of hematologic disorders", in Modelling of physiological flows edited by D. Ambrosi, A. Quarteroni, and G. Rozza, Springer, Milan, Italy, 2011.
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  3. D. A. Fedosov, "Blood cells and blood flow", lecture manuscript of the 42nd IFF Spring School - Macromolecular Systems in Soft and Living Matter organized by J. K. G. Dhont, G. Gompper, P. Lang, D. Richter, M. Ripoll, D. Willbold, and R. Zorn, Juelich, Germany, 2011.
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  4. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Dissipative particle dynamics modeling of red blood cells", in Computational Hydrodynamics of Capsules and Biological Cells edited by C. Pozrikidis, CRC Press, Inc., Boca Raton, FL, 2010.


Conference proceedings


  1. D. A. Fedosov and G. Gompper, "Mesoscale simulations of human blood flow: From red blood cell elasticity and interactions to blood rheology", Proceedings of the 6th NIC Symposium 2012, Juelich, Germany, 2012.
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  2. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Multiscale modeling of blood flow in cerebral malaria", Proceedings of ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, paper no. NEMB2010-13012, pp. 253-254, 2010.
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  3. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Coarse-grained red blood cell model with accurate mechanical properties, rheology and dynamics", Proceedings of the Engineering in Medicine and Biology Society, EMBC, 2009 Annual International Conference of the IEEE, pp. 4266-4269, 2009.
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  4. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Dissipative particle dynamics simulation of polymer- and cell-wall depletion in micro-channels", Proceedings of the XV International Congress on Rheology: The Society of Rheology 80th Annual Meeting, AIP Conference Proceedings, 1027(1), 612-614, 2008.
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  5. D. A. Fedosov, B. Caswell, and G. E. Karniadakis, "Reverse Poiseuille flow: The numerical viscometer", Proceedings of the XV International Congress on Rheology: The Society of Rheology 80th Annual Meeting, AIP Conference Proceedings, 1027(1), 1432-1434, 2008.
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  6. D. A. Fedosov, S. V. Rogazinsky, M. I. Zeifman, M. S. Ivanov, A. A. Alexeenko, and D. A. Levin, "Analysis of numerical errors in the DSMC method", Proceedings of the Rarefied Gas Dynamics: 24th International Symposium on Rarefied Gas Dynamics, AIP Conference Proceedings, 762(1), 589-594, 2005.
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  7. T. Ozawa, D. A. Fedosov, and D. A. Levin, "Modeling of OH product distributions using QCT-MD and BL models in a bow shock", Proceedings of the Rarefied Gas Dynamics: 24th International Symposium on Rarefied Gas Dynamics, AIP Conference Proceedings, 762(1), 902-907, 2005.
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  8. T. Ozawa, D. A. Fedosov, D. A. Levin, and S. F. Gimelshein, "Use of quasi-classical trajectory methods in the modeling of OH production mechanisms in DSMC", AIAA Paper 2004-0336, 42nd AIAA Aerospace Sciences Meeting, 2004.
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  9. A. A. Alexeenko, D. A. Levin, D. A. Fedosov, S. F. Gimelshein, and R. J. Collins, "Coupled thermal-fluid modeling of micronozzles for performance analysis", AIAA Paper 2003-4717, 39th AIAA/ASME/SAE/ASEE Joint Propulsion Conference and Exhibit, 2003.
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  10. A. A. Alexeenko, D. A. Levin, D. A. Fedosov, S., F. Gimelshein, and R. J. Collins, "Coupled thermal-fluid analyses of microthruster flows", AIAA Paper 2003-0673, 41st Aerospace Sciences Meeting and Exhibit, 2003.